6BDF image
Deposition Date 2017-10-23
Release Date 2017-12-27
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6BDF
Keywords:
Title:
2.8 A resolution reconstruction of the Thermoplasma acidophilum 20S proteasome using cryo-electron microscopy
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha
Gene (Uniprot):psmA
Chain IDs:A, C, E, G, I, K, M, O, Q, S, U, W, Y, AA (auth: 0)
Chain Length:233
Number of Molecules:14
Biological Source:Thermoplasma acidophilum
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Gene (Uniprot):psmB
Chain IDs:B, D, F, H, J, L, N, P, R, T, V, X, Z, BA (auth: 1)
Chain Length:211
Number of Molecules:14
Biological Source:Thermoplasma acidophilum
Primary Citation
2.8 angstrom resolution reconstruction of the Thermoplasma acidophilum 20S proteasome using cryo-electron microscopy.
Elife 4 ? ? (2015)
PMID: 25760083 DOI: 10.7554/eLife.06380

Abstact

Recent developments in detector hardware and image-processing software have revolutionized single particle cryo-electron microscopy (cryoEM) and led to a wave of near-atomic resolution (typically ∼3.3 Å) reconstructions. Reaching resolutions higher than 3 Å is a prerequisite for structure-based drug design and for cryoEM to become widely interesting to pharmaceutical industries. We report here the structure of the 700 kDa Thermoplasma acidophilum 20S proteasome (T20S), determined at 2.8 Å resolution by single-particle cryoEM. The quality of the reconstruction enables identifying the rotameric conformation adopted by some amino-acid side chains (rotamers) and resolving ordered water molecules, in agreement with the expectations for crystal structures at similar resolutions. The results described in this manuscript demonstrate that single particle cryoEM is capable of competing with X-ray crystallography for determination of protein structures of suitable quality for rational drug design.

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Primary Citation of related structures