6BC7 image
Entry Detail
PDB ID:
6BC7
Title:
Cryo X-ray structure of sisomicin bound AAC-VIa
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-10-20
Release Date:
2018-02-28
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
P 61
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:AAC 3-VI protein
Chain IDs:A
Chain Length:302
Number of Molecules:1
Biological Source:Enterobacter cloacae
Primary Citation
A low-barrier hydrogen bond mediates antibiotic resistance in a noncanonical catalytic triad.
Sci Adv 4 eaas8667 eaas8667 (2018)
PMID: 29632894 DOI: 10.1126/sciadv.aas8667

Abstact

One group of enzymes that confer resistance to aminoglycoside antibiotics through covalent modification belongs to the GCN5-related N-acetyltransferase (GNAT) superfamily. We show how a unique GNAT subfamily member uses a previously unidentified noncanonical catalytic triad, consisting of a glutamic acid, a histidine, and the antibiotic substrate itself, which acts as a nucleophile and attacks the acetyl donor molecule. Neutron diffraction studies allow for unambiguous identification of a low-barrier hydrogen bond, predicted in canonical catalytic triads to increase basicity of the histidine. This work highlights the role of this unique catalytic triad in mediating antibiotic resistance while providing new insights into the design of the next generation of aminoglycosides.

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Primary Citation of related structures