6BC2 image
Deposition Date 2017-10-20
Release Date 2018-02-28
Last Version Date 2023-10-04
Entry Detail
PDB ID:
6BC2
Title:
Cryo X-ray structure of acetylsisomicin bound AAC-VIa
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.30
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AAC 3-VI protein
Gene (Uniprot):aac 3-VI
Chain IDs:A
Chain Length:302
Number of Molecules:1
Biological Source:Enterobacter cloacae
Primary Citation
A low-barrier hydrogen bond mediates antibiotic resistance in a noncanonical catalytic triad.
Sci Adv 4 eaas8667 eaas8667 (2018)
PMID: 29632894 DOI: 10.1126/sciadv.aas8667

Abstact

One group of enzymes that confer resistance to aminoglycoside antibiotics through covalent modification belongs to the GCN5-related N-acetyltransferase (GNAT) superfamily. We show how a unique GNAT subfamily member uses a previously unidentified noncanonical catalytic triad, consisting of a glutamic acid, a histidine, and the antibiotic substrate itself, which acts as a nucleophile and attacks the acetyl donor molecule. Neutron diffraction studies allow for unambiguous identification of a low-barrier hydrogen bond, predicted in canonical catalytic triads to increase basicity of the histidine. This work highlights the role of this unique catalytic triad in mediating antibiotic resistance while providing new insights into the design of the next generation of aminoglycosides.

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Primary Citation of related structures
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