6BBN image
Deposition Date 2017-10-19
Release Date 2018-05-23
Last Version Date 2023-10-04
Entry Detail
PDB ID:
6BBN
Keywords:
Title:
Crystal structure of a curved tubulin complex induced by the kinesin-13 Kif2A
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Homo sapiens (Taxon ID: 9606)
Bos taurus (Taxon ID: 9913)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.51 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin alpha-1B chain
Chain IDs:A, C
Chain Length:451
Number of Molecules:2
Biological Source:Bos taurus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin beta-2B chain
Gene (Uniprot):TUBB2B
Chain IDs:B, D
Chain Length:445
Number of Molecules:2
Biological Source:Bos taurus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Kinesin-like protein KIF2A
Gene (Uniprot):KIF2A
Chain IDs:F (auth: E)
Chain Length:420
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:DARPin
Chain IDs:E (auth: P)
Chain Length:168
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
Ternary complex of Kif2A-bound tandem tubulin heterodimers represents a kinesin-13-mediated microtubule depolymerization reaction intermediate.
Nat Commun 9 2628 2628 (2018)
PMID: 29980677 DOI: 10.1038/s41467-018-05025-7

Abstact

Kinesin-13 proteins are major microtubule (MT) regulatory factors that catalyze removal of tubulin subunits from MT ends. The class-specific "neck" and loop 2 regions of these motors are required for MT depolymerization, but their contributing roles are still unresolved because their interactions with MT ends have not been observed directly. Here we report the crystal structure of a catalytically active kinesin-13 monomer (Kif2A) in complex with two bent αβ-tubulin heterodimers in a head-to-tail array, providing a view of these interactions. The neck of Kif2A binds to one tubulin dimer and the motor core to the other, guiding insertion of the KVD motif of loop 2 in between them. AMPPNP-bound Kif2A can form stable complexes with tubulin in solution and trigger MT depolymerization. We also demonstrate the importance of the neck in modulating ATP turnover and catalytic depolymerization of MTs. These results provide mechanistic insights into the catalytic cycles of kinesin-13.

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Primary Citation of related structures
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