6B9Y image
Deposition Date 2017-10-11
Release Date 2018-09-05
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6B9Y
Keywords:
IMMUNE SYSTEM
Title:
Trastuzumab Fab v3 in complex with 5-phenyl meditope variant
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Finegoldia magna (Taxon ID: 1260)
Staphylococcus aureus (Taxon ID: 1280)
synthetic construct (Taxon ID: 32630)
Host Organism:
Cricetulus griseus
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.14 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
6B9Y validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Trastuzumab Fab light chain
Gene (Uniprot):IGKC
Chain IDs:A
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P01834 Pfam ID:PF07654
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Trastuzumab Fab heavy chain
Gene (Uniprot):IGH@
Chain IDs:B
Chain Length:223
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q6GMX6 Pfam ID:PF07686, PF07654
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin G binding protein A
Chain IDs:D (auth: C)
Chain Length:54
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:P02976 Pfam ID:PF02216
Polymer Type:polypeptide(L)
Molecule:meditope
Chain IDs:E (auth: D)
Chain Length:16
Number of Molecules:1
Biological Source:synthetic construct
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein L
Chain IDs:C (auth: E)
Chain Length:64
Number of Molecules:1
Biological Source:Finegoldia magna
UniProt ID:Q51918 Pfam ID:PF02246
Primary Citation
Template-Catalyzed, Disulfide Conjugation of Monoclonal Antibodies Using a Natural Amino Acid Tag.
Bioconjug. Chem. 29 2074 2081 (2018)
PMID: 29763554 DOI: 10.1021/acs.bioconjchem.8b00284
Primary Citation of related structures
4IOI
5U3D