6B9H image
Deposition Date 2017-10-10
Release Date 2018-03-21
Last Version Date 2023-10-04
Entry Detail
PDB ID:
6B9H
Title:
Complex of Hook Domain with a Dynein Light Intermediate Chain Peptide
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein Hook homolog 3
Gene (Uniprot):HOOK3
Chain IDs:A
Chain Length:161
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 light intermediate chain 1
Gene (Uniprot):DYNC1LI1
Chain IDs:B
Chain Length:26
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
A conserved interaction of the dynein light intermediate chain with dynein-dynactin effectors necessary for processivity.
Nat Commun 9 986 986 (2018)
PMID: 29515126 DOI: 10.1038/s41467-018-03412-8

Abstact

Cytoplasmic dynein is the major minus-end-directed microtubule-based motor in cells. Dynein processivity and cargo selectivity depend on cargo-specific effectors that, while generally unrelated, share the ability to interact with dynein and dynactin to form processive dynein-dynactin-effector complexes. How this is achieved is poorly understood. Here, we identify a conserved region of the dynein Light Intermediate Chain 1 (LIC1) that mediates interactions with unrelated dynein-dynactin effectors. Quantitative binding studies map these interactions to a conserved helix within LIC1 and to N-terminal fragments of Hook1, Hook3, BICD2, and Spindly. A structure of the LIC1 helix bound to the N-terminal Hook domain reveals a conformational change that creates a hydrophobic cleft for binding of the LIC1 helix. The LIC1 helix competitively inhibits processive dynein-dynactin-effector motility in vitro, whereas structure-inspired mutations in this helix impair lysosomal positioning in cells. The results reveal a conserved mechanism of effector interaction with dynein-dynactin necessary for processive motility.

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