6B6U image
Deposition Date 2017-10-03
Release Date 2017-12-20
Last Version Date 2023-10-04
Entry Detail
PDB ID:
6B6U
Keywords:
Title:
Pyruvate Kinase M2 mutant - S437Y
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.35 Å
R-Value Free:
0.14
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pyruvate kinase PKM
Gene (Uniprot):PKM
Mutagens:S437Y
Chain IDs:A, B
Chain Length:525
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural Investigation of a Dimeric Variant of Pyruvate Kinase Muscle Isoform 2.
Biochemistry 56 6517 6520 (2017)
PMID: 29182273 DOI: 10.1021/acs.biochem.7b01013

Abstact

Pyruvate kinase muscle isoform 2 (PKM2) catalyzes the terminal step in glycolysis, transferring a phosphoryl group from phosphoenolpyruvate to ADP, to produce pyruvate and ATP. PKM2 activity is allosterically regulated by fructose 1,6-bisphosphate (FBP), an upstream glycolytic intermediate. FBP stabilizes the tetrameric form of the enzyme. In its absence, the PKM2 tetramers dissociate, yielding a dimer-monomer mixture having lower enzymatic activity. The S437Y variant of PKM2 is incapable of binding FBP. Consistent with that defect, we find that S437Y exists in a monomer-dimer equilibrium in solution, with a Kd of ∼20 μM. Interestingly, however, the protein crystallizes as a tetramer, providing insight into the structural basis for impaired FBP binding of S437Y.

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Primary Citation of related structures
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