6B6H image
Deposition Date 2017-10-02
Release Date 2017-11-15
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6B6H
Title:
The cryo-EM structure of a bacterial class I transcription activation complex
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:SYNTHETIC NONTEMPLATE STRAND DNA (88-MER)
Chain IDs:J (auth: 1)
Chain Length:88
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polydeoxyribonucleotide
Molecule:SYNTHETIC TEMPLATE STRAND DNA (88-MER)
Chain IDs:K (auth: 2)
Chain Length:88
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Molecule:NASCENT RNA 3-MER
Chain IDs:L (auth: 3)
Chain Length:3
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit alpha
Chain IDs:A, B
Chain Length:329
Number of Molecules:2
Biological Source:Escherichia coli O157:H7
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit beta
Chain IDs:C
Chain Length:1342
Number of Molecules:1
Biological Source:Escherichia coli O45:K1 (strain S88 / ExPEC)
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit beta'
Chain IDs:D
Chain Length:1407
Number of Molecules:1
Biological Source:Escherichia coli O157:H7
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit omega
Chain IDs:E
Chain Length:91
Number of Molecules:1
Biological Source:Escherichia coli O45:K1
Polymer Type:polypeptide(L)
Molecule:RNA polymerase sigma factor RpoD
Gene (Uniprot):rpoD
Chain IDs:F
Chain Length:628
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Molecule:cAMP-activated global transcriptional regulator CRP
Chain IDs:G, H
Chain Length:210
Number of Molecules:2
Biological Source:Escherichia coli O157:H7
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit alpha
Chain IDs:I
Chain Length:75
Number of Molecules:1
Biological Source:Escherichia coli O157:H7
Primary Citation
Structural basis of bacterial transcription activation.
Science 358 947 951 (2017)
PMID: 29146813 DOI: 10.1126/science.aao1923

Abstact

In bacteria, the activation of gene transcription at many promoters is simple and only involves a single activator. The cyclic adenosine 3',5'-monophosphate receptor protein (CAP), a classic activator, is able to activate transcription independently through two different mechanisms. Understanding the class I mechanism requires an intact transcription activation complex (TAC) structure at a high resolution. Here we report a high-resolution cryo-electron microscopy structure of an intact Escherichia coli class I TAC containing a CAP dimer, a σ70-RNA polymerase (RNAP) holoenzyme, a complete class I CAP-dependent promoter DNA, and a de novo synthesized RNA oligonucleotide. The structure shows how CAP wraps the upstream DNA and how the interactions recruit RNAP. Our study provides a structural basis for understanding how activators activate transcription through the class I recruitment mechanism.

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