6B3V image
Deposition Date 2017-09-25
Release Date 2018-08-29
Last Version Date 2023-10-04
Entry Detail
PDB ID:
6B3V
Title:
PANK3 complex with compound PZ-2891
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pantothenate kinase 3
Gene (Uniprot):PANK3
Chain IDs:A
Chain Length:380
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
A therapeutic approach to pantothenate kinase associated neurodegeneration.
Nat Commun 9 4399 4399 (2018)
PMID: 30352999 DOI: 10.1038/s41467-018-06703-2

Abstact

Pantothenate kinase (PANK) is a metabolic enzyme that regulates cellular coenzyme A (CoA) levels. There are three human PANK genes, and inactivating mutations in PANK2 lead to pantothenate kinase associated neurodegeneration (PKAN). Here we performed a library screen followed by chemical optimization to produce PZ-2891, an allosteric PANK activator that crosses the blood brain barrier. PZ-2891 occupies the pantothenate pocket and engages the dimer interface to form a PANK•ATP•Mg2+•PZ-2891 complex. The binding of PZ-2891 to one protomer locks the opposite protomer in a catalytically active conformation that is refractory to acetyl-CoA inhibition. Oral administration of PZ-2891 increases CoA levels in mouse liver and brain. A knockout mouse model of brain CoA deficiency exhibited weight loss, severe locomotor impairment and early death. Knockout mice on PZ-2891 therapy gain weight, and have improved locomotor activity and life span establishing pantazines as novel therapeutics for the treatment of PKAN.

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Primary Citation of related structures