ISDA

Deposition Date 2017-09-21

Release Date 2018-01-03

Last Version Date 2024-03-13

Entry Detail

PDB ID:

6B3H

Keywords:

VIRAL PROTEIN/INHIBITOR

Title:

Crystal Structure of HIV Protease complexed with N-(2-(2-((6R,9S)-2,2-dioxido-2-thia-1,7-diazabicyclo[4.3.1]decan-9-yl)ethyl)-3-fluorophenyl)-3,3-bis(4-fluorophenyl)propanamide

Biological Source:

Source Organism:

Human immunodeficiency virus 1 (Taxon ID: 11676)

Host Organism:

Human immunodeficiency virus 1

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.62 Å

R-Value Free:

0.19

R-Value Work:

0.17

R-Value Observed:

0.17

Space Group:

P 21 21 2

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HIV-1 Protease
Gene (Uniprot):gag-pol
Chain IDs:A, B
Chain Length:99
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1

UniProt ID:P04587 Pfam ID:PF00077

Ligand Molecules

CN4

Primary Citation

Design and Synthesis of Piperazine Sulfonamide Cores Leading to Highly Potent HIV-1 Protease Inhibitors.

Bungard, C.J, Williams, P.D, Schulz, J, Wiscount, C.M, Holloway, M.K, Loughran, H.M, Manikowski, J.J, Su, H.P, Bennett, D.J, Chang, L, Chu, X.J, Crespo, A, Dwyer, M.P, Keertikar, K, Morriello, G.J, Stamford, A.W, Waddell, S.T, Zhong, B, Hu, B, Ji, T, Diamond, T.L, Bahnck-Teets, C, Carroll, S.S, Fay, J.F, Min, X, Morris, W, Ballard, J.E, Miller, M.D, McCauley, J.A.Show

ACS Med Chem Lett 8 1292 1297 (2017)

PMID: 29259750 DOI: 10.1021/acsmedchemlett.7b00386

Abstact

Using the HIV-1 protease binding mode of MK-8718 and PL-100 as inspiration, a novel aspartate binding bicyclic piperazine sulfonamide core was designed and synthesized. The resulting HIV-1 protease inhibitor containing this core showed an 60-fold increase in enzyme binding affinity and a 10-fold increase in antiviral activity relative to MK-8718.

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