6B35 image
Deposition Date 2017-09-20
Release Date 2017-12-06
Last Version Date 2023-11-15
Entry Detail
PDB ID:
6B35
Title:
NMR ensemble of Tyrocidine A analogue AC3.28
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
10
Conformers Submitted:
8
Selection Criteria:
structures with acceptable covalent geometry
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tyrocidine A analogue D-PHE-BE2-PHE-D-PHE-ASN-LYS-TYR-VAL-ORN-LEU
Chain IDs:A
Chain Length:10
Number of Molecules:1
Biological Source:Brevibacillus brevis
Ligand Molecules
Peptide-like Molecules
PRD_002290
Primary Citation
Tyrocidine A Analogues Bearing the Planar d-Phe-2-Abz Turn Motif: How Conformation Impacts Bioactivity.
J. Med. Chem. 60 9565 9574 (2017)
PMID: 29140694 DOI: 10.1021/acs.jmedchem.7b00953

Abstact

The d-Phe-Pro β-turn of the cyclic β-hairpin antimicrobial decapeptide tyrocidine A, (Tyrc A) was substituted with the d-Phe-2-aminobenzoic acid (2-Abz) motif in a synthetic analogue (1). The NMR structure of 1 demonstrated that compound 1 retained the β-hairpin structure of Tyrc A with additional planarity, resulting in approximately 30-fold reduced hemolysis than Tyrc A. Although antibacterial activity was partially compromised, a single Gln to Lys substitution (2) restored activity equivalent to Tyrc A against S. aureus, enhanced activity against two Gram negative strains and maintained the reduced hemeloysis of 1. Analysis by transmission electron microscopy (TEM) suggested a membrane lytic mechanism of action for these peptides. Compound 2 also exhibits nanomolar antifungal activity in synergy with amphotericin B. The d-Phe-2-Abz turn may serve as a tool for the synthesis of structurally predictable β-hairpin libraries. Unlike traditional β-turn motifs such as d-Pro-Gly, both the 2-Abz and d-Phe rings may be further functionalized.

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