6B2E image
Entry Detail
PDB ID:
6B2E
Keywords:
Title:
Structure of full length human AMPK (a2b2g1) in complex with a small molecule activator SC4.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-09-19
Release Date:
2018-04-25
Method Details:
Experimental Method:
Resolution:
3.80 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:5'-AMP-activated protein kinase catalytic subunit alpha-2
Chain IDs:A
Chain Length:565
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:5'-AMP-activated protein kinase subunit beta-2
Chain IDs:B
Chain Length:272
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:5'-AMP-activated protein kinase subunit gamma-1
Chain IDs:C
Chain Length:336
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP B SER modified residue
TPO A THR modified residue
Peptide-like Molecules
PRD_900012
Primary Citation
Structural Determinants for Small-Molecule Activation of Skeletal Muscle AMPK alpha 2 beta 2 gamma 1 by the Glucose Importagog SC4.
Cell Chem Biol 25 728 737.e9 (2018)
PMID: 29657085 DOI: 10.1016/j.chembiol.2018.03.008

Abstact

The AMP-activated protein kinase (AMPK) αβγ heterotrimer regulates cellular energy homeostasis with tissue-specific isoform distribution. Small-molecule activation of skeletal muscle α2β2 AMPK complexes may prove a valuable treatment strategy for type 2 diabetes and insulin resistance. Herein, we report the small-molecule SC4 is a potent, direct AMPK activator that preferentially activates α2 complexes and stimulates skeletal muscle glucose uptake. In parallel with the term secretagog, we propose "importagog" to define a substance that induces or augments cellular uptake of another substance. Three-dimensional structures of the glucose importagog SC4 bound to activated α2β2γ1 and α2β1γ1 complexes reveal binding determinants, in particular a key interaction between the SC4 imidazopyridine 4'-nitrogen and β2-Asp111, which provide a design paradigm for β2-AMPK therapeutics. The α2β2γ1/SC4 structure reveals an interaction between a β2 N-terminal α helix and the α2 autoinhibitory domain. Our results provide a structure-function guide to accelerate development of potent, but importantly tissue-specific, β2-AMPK therapeutics.

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