6B20 image
Deposition Date 2017-09-19
Release Date 2018-05-30
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6B20
Title:
Crystal structure of a complex between G protein beta gamma dimer and an inhibitory Nanobody regulator
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Lama glama (Taxon ID: 9844)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.34 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Gene (Uniprot):GNB1
Mutations:V71L
Chain IDs:A, C (auth: B)
Chain Length:338
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(T) subunit gamma-T1
Gene (Uniprot):GNGT1
Chain IDs:B (auth: C), D
Chain Length:60
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Nanobody against G protein beta gamma dimer
Chain IDs:E, F
Chain Length:114
Number of Molecules:2
Biological Source:Lama glama
Primary Citation
Targeting G protein-coupled receptor signaling at the G protein level with a selective nanobody inhibitor.
Nat Commun 9 1996 1996 (2018)
PMID: 29777099 DOI: 10.1038/s41467-018-04432-0

Abstact

G protein-coupled receptors (GPCRs) activate heterotrimeric G proteins by mediating a GDP to GTP exchange in the Gα subunit. This leads to dissociation of the heterotrimer into Gα-GTP and Gβγ dimer. The Gα-GTP and Gβγ dimer each regulate a variety of downstream pathways to control various aspects of human physiology. Dysregulated Gβγ-signaling is a central element of various neurological and cancer-related anomalies. However, Gβγ also serves as a negative regulator of Gα that is essential for G protein inactivation, and thus has the potential for numerous side effects when targeted therapeutically. Here we report a llama-derived nanobody (Nb5) that binds tightly to the Gβγ dimer. Nb5 responds to all combinations of β-subtypes and γ-subtypes and competes with other Gβγ-regulatory proteins for a common binding site on the Gβγ dimer. Despite its inhibitory effect on Gβγ-mediated signaling, Nb5 has no effect on Gαq-mediated and Gαs-mediated signaling events in living cells.

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Primary Citation of related structures