6B1U image
Deposition Date 2017-09-19
Release Date 2018-04-25
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6B1U
Keywords:
Title:
Structure of full-length human AMPK (a2b1g1) in complex with a small molecule activator SC4
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.77 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:5'-AMP-activated protein kinase catalytic subunit alpha-2
Gene (Uniprot):PRKAA2
Chain IDs:A, C
Chain Length:565
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:5'-AMP-activated protein kinase subunit beta-1
Gene (Uniprot):PRKAB1
Chain IDs:B, D
Chain Length:270
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:5'-AMP-activated protein kinase subunit gamma-1
Gene (Uniprot):PRKAG1
Chain IDs:E, F
Chain Length:336
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP B SER modified residue
TPO A THR modified residue
Primary Citation
Structural Determinants for Small-Molecule Activation of Skeletal Muscle AMPK alpha 2 beta 2 gamma 1 by the Glucose Importagog SC4.
Cell Chem Biol 25 728 737.e9 (2018)
PMID: 29657085 DOI: 10.1016/j.chembiol.2018.03.008

Abstact

The AMP-activated protein kinase (AMPK) αβγ heterotrimer regulates cellular energy homeostasis with tissue-specific isoform distribution. Small-molecule activation of skeletal muscle α2β2 AMPK complexes may prove a valuable treatment strategy for type 2 diabetes and insulin resistance. Herein, we report the small-molecule SC4 is a potent, direct AMPK activator that preferentially activates α2 complexes and stimulates skeletal muscle glucose uptake. In parallel with the term secretagog, we propose "importagog" to define a substance that induces or augments cellular uptake of another substance. Three-dimensional structures of the glucose importagog SC4 bound to activated α2β2γ1 and α2β1γ1 complexes reveal binding determinants, in particular a key interaction between the SC4 imidazopyridine 4'-nitrogen and β2-Asp111, which provide a design paradigm for β2-AMPK therapeutics. The α2β2γ1/SC4 structure reveals an interaction between a β2 N-terminal α helix and the α2 autoinhibitory domain. Our results provide a structure-function guide to accelerate development of potent, but importantly tissue-specific, β2-AMPK therapeutics.

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