6AXF image
Deposition Date 2017-09-06
Release Date 2017-10-11
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6AXF
Keywords:
Title:
Structure of RasGRP2 in complex with Rap1B
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
I 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:RAS guanyl-releasing protein 2
Gene (Uniprot):RASGRP2
Chain IDs:A, C, E, G, I, K, M, O
Chain Length:397
Number of Molecules:8
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Ras-related protein Rap-1b
Gene (Uniprot):RAP1B
Chain IDs:B, D, F, H, J, L, N, P
Chain Length:169
Number of Molecules:8
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
Primary Citation
A histidine pH sensor regulates activation of the Ras-specific guanine nucleotide exchange factor RasGRP1.
Elife 6 ? ? (2017)
PMID: 28952923 DOI: 10.7554/eLife.29002

Abstact

RasGRPs are guanine nucleotide exchange factors that are specific for Ras or Rap, and are important regulators of cellular signaling. Aberrant expression or mutation of RasGRPs results in disease. An analysis of RasGRP1 SNP variants led to the conclusion that the charge of His 212 in RasGRP1 alters signaling activity and plasma membrane recruitment, indicating that His 212 is a pH sensor that alters the balance between the inactive and active forms of RasGRP1. To understand the structural basis for this effect we compared the structure of autoinhibited RasGRP1, determined previously, to those of active RasGRP4:H-Ras and RasGRP2:Rap1b complexes. The transition from the autoinhibited to the active form of RasGRP1 involves the rearrangement of an inter-domain linker that displaces inhibitory inter-domain interactions. His 212 is located at the fulcrum of these conformational changes, and structural features in its vicinity are consistent with its function as a pH-dependent switch.

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Protein

Chemical

Disease

Primary Citation of related structures