6AX4 image
Entry Detail
PDB ID:
6AX4
Keywords:
Title:
Plk-1 polo-box domain in complex with histidine N(tau)-cyclized Macrocycle 5b.
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2017-09-06
Release Date:
2018-09-12
Method Details:
Experimental Method:
Resolution:
1.45 Å
R-Value Free:
0.16
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Serine/threonine-protein kinase PLK1
Chain IDs:A
Chain Length:237
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:histidine N(tau)-cyclized Macrocycle 5b
Chain IDs:B (auth: C)
Chain Length:5
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Histidine N( tau )-cyclized macrocycles as a new genre of polo-like kinase 1 polo-box domain-binding inhibitors.
Bioorg. Med. Chem. Lett. 28 3202 3205 (2018)
PMID: 30174151 DOI: 10.1016/j.bmcl.2018.08.018

Abstact

Transition toward peptide mimetics of reduced size is an important objective of peptide macrocyclization. We have previously shown that PLH∗SpT (2a) (where H∗ indicates the presence of a -(CH2)8Ph group at the N(π) position and pT indicates phosphothreonine) is an extremely high affinity ligand of the polo-like kinase 1 (Plk1) polo-box domain (PBD). Herein we report that C-terminal macrocyclization of 2a employing N(π),N(τ)-bis-alkylated His residues as ring junctions can be achieved in a very direct fashion. The resulting macrocycles are highly potent in biochemical assays and maintain good target selectivity for the Plk1 PBD versus the PBDs of Plk2 and Plk3. Importantly, as exemplified by 5d, our current approach permits deletion of the N-terminal "Pro-Leu" motif to yield tripeptide ligands with decreased molecular weight, which retain high affinity and show improved target selectivity. These findings could fundamentally impact the future development of peptide macrocycles in general and Plk1 PBD-binding peptide mimetics in particular.

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