6AVW image
Entry Detail
PDB ID:
6AVW
Keywords:
Title:
Crystal structure of Arabidopsis thaliana SOBER1 L63A
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-09-04
Release Date:
2017-12-27
Method Details:
Experimental Method:
Resolution:
2.14 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Carboxylesterase SOBER1
Mutations:L63A
Chain IDs:A
Chain Length:230
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Primary Citation
A hydrophobic anchor mechanism defines a deacetylase family that suppresses host response against YopJ effectors.
Nat Commun 8 2201 2201 (2017)
PMID: 29259199 DOI: 10.1038/s41467-017-02347-w

Abstact

Several Pseudomonas and Xanthomonas species are plant pathogens that infect the model organism Arabidopsis thaliana and important crops such as Brassica. Resistant plants contain the infection by rapid cell death of the infected area through the hypersensitive response (HR). A family of highly related α/β hydrolases is involved in diverse processes in all domains of life. Functional details of their catalytic machinery, however, remained unclear. We report the crystal structures of α/β hydrolases representing two different clades of the family, including the protein SOBER1, which suppresses AvrBsT-incited HR in Arabidopsis. Our results reveal a unique hydrophobic anchor mechanism that defines a previously unknown family of protein deacetylases. Furthermore, this study identifies a lid-loop as general feature for substrate turnover in acyl-protein thioesterases and the described family of deacetylases. Furthermore, we found that SOBER1's biological function is not restricted to Arabidopsis thaliana and not limited to suppress HR induced by AvrBsT.

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Primary Citation of related structures