6ANU image
Deposition Date 2017-08-14
Release Date 2017-11-22
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6ANU
Title:
Cryo-EM structure of F-actin complexed with the beta-III-spectrin actin-binding domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
7.00 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin, cytoplasmic 1
Gene (Uniprot):ACTB
Chain IDs:A (auth: F), B (auth: A), C (auth: B), D (auth: C), E (auth: D), F (auth: E)
Chain Length:284
Number of Molecules:6
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spectrin beta chain, non-erythrocytic 2
Gene (Uniprot):SPTBN2
Mutagens:L253P
Chain IDs:G (auth: f), H (auth: a), I (auth: b), J (auth: c), K (auth: d), L (auth: e)
Chain Length:284
Number of Molecules:6
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis for high-affinity actin binding revealed by a beta-III-spectrin SCA5 missense mutation.
Nat Commun 8 1350 1350 (2017)
PMID: 29116080 DOI: 10.1038/s41467-017-01367-w

Abstact

Spinocerebellar ataxia type 5 (SCA5) is a neurodegenerative disease caused by mutations in the cytoskeletal protein β-III-spectrin. Previously, a SCA5 mutation resulting in a leucine-to-proline substitution (L253P) in the actin-binding domain (ABD) was shown to cause a 1000-fold increase in actin-binding affinity. However, the structural basis for this increase is unknown. Here, we report a 6.9 Å cryo-EM structure of F-actin complexed with the L253P ABD. This structure, along with co-sedimentation and pulsed-EPR measurements, demonstrates that high-affinity binding caused by the CH2-localized mutation is due to opening of the two CH domains. This enables CH1 to bind actin aided by an unstructured N-terminal region that becomes α-helical upon binding. This helix is required for association with actin as truncation eliminates binding. Collectively, these results shed light on the mechanism by which β-III-spectrin, and likely similar actin-binding proteins, interact with actin, and how this mechanism can be perturbed to cause disease.

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Primary Citation of related structures