6ANN image
Deposition Date 2017-08-14
Release Date 2017-11-15
Last Version Date 2023-11-15
Entry Detail
PDB ID:
6ANN
Keywords:
Title:
Structure of cyclic D-Leu-N-methyl-D-Phe-2-Abz-D-Ala at 0.76 Angstrom
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
0.76 Å
R-Value Free:
0.15
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(D)
Molecule:cyclic DLE-ZAE-BE2-DAL
Chain IDs:A, B, C, D, E
Chain Length:4
Number of Molecules:5
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Crystal and NMR Structures of a Peptidomimetic beta-Turn That Provides Facile Synthesis of 13-Membered Cyclic Tetrapeptides.
Chem Asian J 12 3195 3202 (2017)
PMID: 29098772 DOI: 10.1002/asia.201701422

Abstact

Herein we report the unique conformations adopted by linear and cyclic tetrapeptides (CTPs) containing 2-aminobenzoic acid (2-Abz) in solution and as single crystals. The crystal structure of the linear tetrapeptide H2 N-d-Leu-d-Phe-2-Abz-d-Ala-COOH (1) reveals a novel planar peptidomimetic β-turn stabilized by three hydrogen bonds and is in agreement with its NMR structure in solution. While CTPs are often synthetically inaccessible or cyclize in poor yield, both 1 and its N-Me-d-Phe analogue (2) adopt pseudo-cyclic frameworks enabling near quantitative conversion to the corresponding CTPs 3 and 4. The crystal structure of the N-methylated peptide (4) is the first reported for a CTP containing 2-Abz and reveals a distinctly planar 13-membered ring, which is also evident in solution. The N-methylation of d-Phe results in a peptide bond inversion compared to the conformation of 3 in solution.

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