6AKX image
Entry Detail
PDB ID:
6AKX
Title:
The Crystal structure of Human Chemokine Receptor CCR5 in complex with compound 21
Biological Source:
PDB Version:
Deposition Date:
2018-09-04
Release Date:
2018-10-24
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:C-C chemokine receptor type 5,Rubredoxin,C-C chemokine receptor type 5
Mutations:C58Y, G163N, A233D, K303E
Chain IDs:A, B
Chain Length:381
Number of Molecules:2
Biological Source:Homo sapiens, Clostridium pasteurianum
Primary Citation
Structure-Based Design of 1-Heteroaryl-1,3-propanediamine Derivatives as a Novel Series of CC-Chemokine Receptor 5 Antagonists.
J. Med. Chem. 61 9621 9636 (2018)
PMID: 30234300 DOI: 10.1021/acs.jmedchem.8b01077

Abstact

CC-chemokine receptor 5 (CCR5) is an attractive target for preventing the entry of human immunodeficiency virus 1 (HIV-1) into human host cells. Maraviroc is the only CCR5 antagonist, and it was marketed in 2007. To overcome the shortcomings of maraviroc, structure-based drug design was performed to minimize CYP450 inhibition and to enhance anti-HIV potency and bioavailability. Thirty-four novel 1-heteroaryl-1,3-propanediamine derivatives (1-34) were synthesized, displaying CCR5-antagonist activities in the 2.3-296.4 nM range. Among these, compounds 21 and 34 were the most potent CCR5 antagonists, with excellent in vitro anti-HIV-1 activity, low cytotoxicity, and an acceptable pharmacokinetic profile. Furthermore, the X-ray crystal structures of compounds 21 and 34 bound to CCR5 were determined at 2.8 Å resolution. Compound 34 exhibited no CYP450-inhibition activity at 25 μM, which overcomes the potential drug-drug interaction of maraviroc. Compound 34 represents a promising drug candidate for HIV-infection treatment.

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