6AKD image
Deposition Date 2018-08-31
Release Date 2019-03-06
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6AKD
Keywords:
Title:
Crystal structure of IdnL7
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AMP-dependent synthetase and ligase
Gene (Uniprot):idnL7
Chain IDs:A
Chain Length:538
Number of Molecules:1
Biological Source:Streptomyces sp. ML694-90F3
Primary Citation
Functional and structural characterization of IdnL7, an adenylation enzyme involved in incednine biosynthesis.
Acta Crystallogr F Struct Biol Commun 75 299 306 (2019)
PMID: 30950831 DOI: 10.1107/S2053230X19002863

Abstact

Adenylation enzymes play an important role in the selective incorporation of the cognate carboxylate substrates in natural product biosynthesis. Here, the biochemical and structural characterization of the adenylation enzyme IdnL7, which is involved in the biosynthesis of the macrolactam polyketide antibiotic incednine, is reported. Biochemical analysis showed that IdnL7 selects and activates several small amino acids. The structure of IdnL7 in complex with an L-alanyl-adenylate intermediate mimic, 5'-O-[N-(L-alanyl)sulfamoyl]adenosine, was determined at 2.1 Å resolution. The structure of IdnL7 explains the broad substrate specificity of IdnL7 towards small L-amino acids.

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