6AK1 image
Deposition Date 2018-08-28
Release Date 2018-12-12
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6AK1
Keywords:
Title:
Crystal structure of DmoA from Hyphomicrobium sulfonivorans
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.28 Å
R-Value Free:
0.20
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dimethyl-sulfide monooxygenase
Gene (Uniprot):dmoA
Chain IDs:A, B
Chain Length:488
Number of Molecules:2
Biological Source:Hyphomicrobium sulfonivorans
Primary Citation
Crystal structure of the dimethylsulfide monooxygenase DmoA from Hyphomicrobium sulfonivorans.
Acta Crystallogr.,Sect.F 74 781 786 (2018)
PMID: 30511672 DOI: 10.1107/S2053230X18015844

Abstact

DmoA is a monooxygenase which uses dioxygen (O2) and reduced flavin mononucleotide (FMNH2) to catalyze the oxidation of dimethylsulfide (DMS). Although it has been characterized, the structure of DmoA remains unknown. Here, the crystal structure of DmoA was determined to a resolution of 2.28 Å and was compared with those of its homologues LadA and BdsA. The results showed that their overall structures are similar: they all share a conserved TIM-barrel fold which is composed of eight α-helices and eight β-strands. In addition, they all have five additional insertions. Detailed comparison showed that the structures have notable differences despite their high sequence similarity. The substrate-binding pocket of DmoA is smaller compared with those of LadA and BdsA.

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Primary Citation of related structures
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