6A4K image
Deposition Date 2018-06-20
Release Date 2019-03-27
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6A4K
Title:
Human antibody 32D6 Fab in complex with H1N1 influenza A virus HA1
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.15 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 31 1 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Chain IDs:A, D (auth: B), G (auth: C), J (auth: D)
Chain Length:235
Number of Molecules:4
Biological Source:Influenza A virus (A/California/7/2009(H1N1))
Polymer Type:polypeptide(L)
Molecule:immunoglobulin Fab heavy chain
Chain IDs:B (auth: H), E (auth: I), H (auth: J), K
Chain Length:238
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:immunoglobulin Fab light chain
Chain IDs:C (auth: L), F (auth: M), I (auth: N), L (auth: O)
Chain Length:216
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
An Effective Neutralizing Antibody Against Influenza Virus H1N1 from Human B Cells.
Sci Rep 9 4546 4546 (2019)
PMID: 30872685 DOI: 10.1038/s41598-019-40937-4

Abstact

Influenza is a contagious acute respiratory disease caused by the influenza virus infection. Hemagglutinin (HA) is an important target in the therapeutic treatment and diagnostic detection of the influenza virus. Influenza A virus encompasses several different HA subtypes with different strains, which are constantly changing. In this study, we identified a fully human H1N1 neutralizing antibody (32D6) via an Epstein-Barr virus-immortalized B cell-based technology. 32D6 specifically neutralizes the clinically isolated H1N1 strains after the 2009 pandemic but not the earlier strains. The epitope was identified through X-ray crystallographic analysis of the 32D6-Fab/HA1 complex structure, which revealed a unique loop conformation located on the top surface of HA. The major region is composed of two peptide segments (residues 172-177 and 206-213), which form an abreast loop conformation. The residue T262 between the two loops forms a conformational epitope for recognition by 32D6. Three water molecules were observed at the interface of HA and the heavy chain, and they may constitute a stabilizing element for the 32D6-HA association. In addition, each 32D6-Fab is likely capable of blocking one HA trimer. This study provides important information on the strain specificity of 32D6 for the therapeutic treatment and detection of viral infection.

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