6A42 image
Deposition Date 2018-06-19
Release Date 2018-10-24
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6A42
Title:
R1EN(5-223)-ubiquitin fusion
Biological Source:
Source Organism:
Bombyx mori (Taxon ID: 7091)
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 3 2 1
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA-directed DNA polymerase homolog (R1),Polyubiquitin-C
Gene (Uniprot):UBC
Mutagens:E44A
Chain IDs:A
Chain Length:298
Number of Molecules:1
Biological Source:Bombyx mori, Bos taurus
Ligand Molecules
Primary Citation
Crystal Structure Determination of Ubiquitin by Fusion to a Protein That Forms a Highly Porous Crystal Lattice
J. Am. Chem. Soc. 140 13546 13549 (2018)
PMID: 30299944 DOI: 10.1021/jacs.8b07512

Abstact

The protein crystallization process requires screening of a large number of conditions using a large quantity of high-purity protein, which makes crystal structure analysis difficult. Thus, the development of easy and versatile protein crystallization techniques is both extremely desirable and highly challenging. Here I demonstrate the crystallization and structure determination of ubiquitin by genetic fusion to the highly porous honeycomb lattice of R1EN. I successfully crystallized and collected X-ray data from three R1EN-ubiquitin constructs with various linker lengths under the same conditions as the original R1EN. The crystals diffracted to 1.7-2.4 Å resolution, and the ubiquitin structures were determined with results almost identical to the previously published structure. Moreover, the ubiquitin structure could be solved by molecular replacement using R1EN alone. This method may reduce the effort required for crystallization screening and is applicable to de novo protein structure determination.

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