6A22 image
Entry Detail
PDB ID:
6A22
Title:
Ternary complex of Human ROR gamma Ligand Binding Domain With Compound T.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-06-08
Release Date:
2018-12-12
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Nuclear receptor ROR-gamma
Chain IDs:A, C, E, G
Chain Length:258
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Nuclear receptor corepressor 2
Chain IDs:B, D, F, H
Chain Length:22
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Ternary crystal structure of human ROR gamma ligand-binding-domain, an inhibitor and corepressor peptide provides a new insight into corepressor interaction
Sci Rep 8 17374 17374 (2018)
PMID: 30478402 DOI: 10.1038/s41598-018-35783-9

Abstact

Retinoic acid-related orphan receptor gamma (RORγ) plays pivotal roles in autoimmune diseases by controlling the lineage of interleukin 17 (IL-17)-producing CD4+ T cells (Th17 cells). Structure-based drug design has proven fruitful in the development of inhibitors targeting the ligand binding domain (LBD) of RORγ. Here, we present the crystal structure of a novel RORγ inhibitor co-complex, in the presence of a corepressor (CoR) peptide. This ternary complex with compound T reveals the structural basis for an inhibitory mechanism different from the previously reported inverse agonist. Compared to the inverse agonist, compound T induces about 2 Å shift of helix 5 (H5) backbone and side-chain conformational changes of Met365 on H5. These conformational changes correlate to reduced CoR peptide binding to RORγ-LBD in the presence of compound T, which suggests that the shift of H5 is responsible. This crystal structure analysis will provide useful information for the development of novel and efficacious drugs for autoimmune disorders.

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Primary Citation of related structures