5vgp image
Deposition Date 2017-04-11
Release Date 2018-04-18
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5VGP
Keywords:
Title:
Fc fragment of human IgG1 antibody, from NIST mAb
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.12 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Human Fc fragment with G1F/G0F glycan
Chain IDs:A, B
Chain Length:223
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure of the Fc fragment of the NIST reference antibody RM8671.
Acta Crystallogr F Struct Biol Commun 74 524 529 (2018)
PMID: 30198883 DOI: 10.1107/S2053230X18009834

Abstact

As the link between antigen binding and immune activation, the antibody Fc region has received extensive structural study. In this report, the structure of the Fc fragment of the NIST IgG1 mAb (reference material 8671) is described at 2.1 Å resolution in space group P212121, with approximate unit-cell parameters a = 50, b = 80, c = 138 Å. Prior Fc structures with a wide variety of modifications are also surveyed, focusing on those in the same crystal form. To facilitate the analysis of conformations, a reference frame and a two-parameter metric are proposed, considering the CH2 domains as mobile with respect to a fixed dimeric CH3 core. Over several human Fc structures, a significant variation in Fc elbow conformations is observed, which may serve to facilitate the regulation of Fc effector signaling.

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