5oq9 image
Entry Detail
PDB ID:
5OQ9
Title:
XFEL structure of the off state of a reversibly photoswitching fluorescent protein determined using the droplet on demand injection method
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2017-08-11
Release Date:
2017-12-06
Method Details:
Experimental Method:
Resolution:
1.51 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Green to red photoconvertible GFP-like protein EosFP
Chain IDs:A
Chain Length:226
Number of Molecules:1
Biological Source:Lobophyllia hemprichii
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
VYA A HIS chromophore
Primary Citation
X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature.
Int J Mol Sci 18 ? ? (2017)
PMID: 28880248 DOI: 10.3390/ijms18091918

Abstact

The photochromic fluorescent protein Skylan-NS (Nonlinear Structured illumination variant mEos3.1H62L) is a reversibly photoswitchable fluorescent protein which has an unilluminated/ground state with an anionic and cis chromophore conformation and high fluorescence quantum yield. Photo-conversion with illumination at 515 nm generates a meta-stable intermediate with neutral trans-chromophore structure that has a 4 h lifetime. We present X-ray crystal structures of the cis (on) state at 1.9 Angstrom resolution and the trans (off) state at a limiting resolution of 1.55 Angstrom from serial femtosecond crystallography experiments conducted at SPring-8 Angstrom Compact Free Electron Laser (SACLA) at 7.0 keV and 10.5 keV, and at Linac Coherent Light Source (LCLS) at 9.5 keV. We present a comparison of the data reduction and structure determination statistics for the two facilities which differ in flux, beam characteristics and detector technologies. Furthermore, a comparison of droplet on demand, grease injection and Gas Dynamic Virtual Nozzle (GDVN) injection shows no significant differences in limiting resolution. The photoconversion of the on- to the off-state includes both internal and surface exposed protein structural changes, occurring in regions that lack crystal contacts in the orthorhombic crystal form.

Legend

Protein

Chemical

Disease

Primary Citation of related structures