5dlt image
Entry Detail
PDB ID:
5DLT
Keywords:
Title:
Crystal structure of Autotaxin (ENPP2) with 7-alpha-hydroxycholesterol
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-09-07
Release Date:
2016-04-13
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ectonucleotide pyrophosphatase/phosphodiesterase family member 2
Mutations:N410A
Chain IDs:A
Chain Length:827
Number of Molecules:1
Biological Source:Rattus norvegicus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TPO A THR modified residue
Primary Citation
Steroid binding to Autotaxin links bile salts and lysophosphatidic acid signalling.
Nat Commun 7 11248 11248 (2016)
PMID: 27075612 DOI: 10.1038/ncomms11248

Abstact

Autotaxin (ATX) generates the lipid mediator lysophosphatidic acid (LPA). ATX-LPA signalling is involved in multiple biological and pathophysiological processes, including vasculogenesis, fibrosis, cholestatic pruritus and tumour progression. ATX has a tripartite active site, combining a hydrophilic groove, a hydrophobic lipid-binding pocket and a tunnel of unclear function. We present crystal structures of rat ATX bound to 7α-hydroxycholesterol and the bile salt tauroursodeoxycholate (TUDCA), showing how the tunnel selectively binds steroids. A structure of ATX simultaneously harbouring TUDCA in the tunnel and LPA in the pocket, together with kinetic analysis, reveals that bile salts act as partial non-competitive inhibitors of ATX, thereby attenuating LPA receptor activation. This unexpected interplay between ATX-LPA signalling and select steroids, notably natural bile salts, provides a molecular basis for the emerging association of ATX with disorders associated with increased circulating levels of bile salts. Furthermore, our findings suggest potential clinical implications in the use of steroid drugs.

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