5ZZM image
Deposition Date 2018-06-03
Release Date 2018-06-27
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5ZZM
Keywords:
Title:
E. coli 50S subunit bound HflX protein in presence of ATP (AMP-PNP) and GTP (GMP-PNP) analogs.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
8.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:GTPase HflX
Gene (Uniprot):hflX
Chain IDs:A
Chain Length:426
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:B (auth: M)
Chain Length:120
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Molecule:23S rRNA
Chain IDs:C (auth: N)
Chain Length:2903
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
The universally conserved GTPase HflX is an RNA helicase that restores heat-damagedEscherichia coliribosomes.
J. Cell Biol. 217 2519 2529 (2018)
PMID: 29930203 DOI: 10.1083/jcb.201711131

Abstact

The ribosome-associated GTPase HflX acts as an antiassociation factor upon binding to the 50S ribosomal subunit during heat stress in Escherichia coli Although HflX is recognized as a guanosine triphosphatase, several studies have shown that the N-terminal domain 1 of HflX is capable of hydrolyzing adenosine triphosphate (ATP), but the functional role of its adenosine triphosphatase (ATPase) activity remains unknown. We demonstrate that E. coli HflX possesses ATP-dependent RNA helicase activity and is capable of unwinding large subunit ribosomal RNA. A cryo-electron microscopy structure of the 50S-HflX complex in the presence of nonhydrolyzable analogues of ATP and guanosine triphosphate hints at a mode of action for the RNA helicase and suggests the linker helical domain may have a determinant role in RNA unwinding. Heat stress results in inactivation of the ribosome, and we show that HflX can restore heat-damaged ribosomes and improve cell survival.

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Primary Citation of related structures