5ZZ8 image
Deposition Date 2018-05-31
Release Date 2018-10-10
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5ZZ8
Title:
Structure of the Herpes simplex virus type 2 C-capsid with capsid-vertex-specific component
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.75 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):UL19
Chain IDs:P (auth: I), Q (auth: J), R (auth: K), S (auth: L), T (auth: M), U (auth: A), V (auth: H), FA (auth: N), GA (auth: O), HA (auth: P), IA (auth: B), JA (auth: C), KA (auth: D), MA (auth: E), OA (auth: F), QA (auth: G)
Chain Length:1374
Number of Molecules:16
Biological Source:Human herpesvirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VP19C
Gene (Uniprot):UL38
Chain IDs:A (auth: Q), D (auth: T), G (auth: W), J (auth: 1), M (auth: w)
Chain Length:466
Number of Molecules:5
Biological Source:Human herpesvirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VP23
Gene (Uniprot):TRX2
Chain IDs:B (auth: R), C (auth: S), E (auth: U), F (auth: V), H (auth: X), I (auth: Y), K (auth: 3), L (auth: 2), N (auth: x), O (auth: y)
Chain Length:318
Number of Molecules:10
Biological Source:Human herpesvirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VP26
Gene (Uniprot):SCP
Chain IDs:W (auth: h), X (auth: i), Y (auth: j), Z (auth: k), AA (auth: l), BA (auth: m), CA (auth: n), DA (auth: o), EA (auth: p), SA (auth: b), TA (auth: c), UA (auth: d), VA (auth: e), WA (auth: f), XA (auth: g)
Chain Length:112
Number of Molecules:15
Biological Source:Human herpesvirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:UL17
Gene (Uniprot):UL17
Chain IDs:LA (auth: q)
Chain Length:702
Number of Molecules:1
Biological Source:Human herpesvirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:UL25
Gene (Uniprot):UL25
Chain IDs:NA (auth: r), PA (auth: s)
Chain Length:318
Number of Molecules:2
Biological Source:Human herpesvirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:UL36
Gene (Uniprot):UL36
Chain IDs:RA (auth: t), YA (auth: u)
Chain Length:466
Number of Molecules:2
Biological Source:Human herpesvirus 2
Ligand Molecules
Primary Citation
Structure of the herpes simplex virus type 2 C-capsid with capsid-vertex-specific component.
Nat Commun 9 3668 3668 (2018)
PMID: 30201968 DOI: 10.1038/s41467-018-06078-4

Abstact

Herpes simplex viruses (HSVs) cause human oral and genital ulcer diseases. Patients with HSV-2 have a higher risk of acquiring a human immunodeficiency virus infection. HSV-2 is a member of the α-herpesvirinae subfamily that together with the β- and γ-herpesvirinae subfamilies forms the Herpesviridae family. Here, we report the cryo-electron microscopy structure of the HSV-2 C-capsid with capsid-vertex-specific component (CVSC) that was determined at 3.75 Å using a block-based reconstruction strategy. We present atomic models of multiple conformers for the capsid proteins (VP5, VP23, VP19C, and VP26) and CVSC. Comparison of the HSV-2 homologs yields information about structural similarities and differences between the three herpesviruses sub-families and we identify α-herpesvirus-specific structural features. The hetero-pentameric CVSC, consisting of a UL17 monomer, a UL25 dimer and a UL36 dimer, is bound tightly by a five-helix bundle that forms extensive networks of subunit contacts with surrounding capsid proteins, which reinforce capsid stability.

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Primary Citation of related structures