5ZXI image
Deposition Date 2018-05-21
Release Date 2019-04-03
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5ZXI
Keywords:
Title:
Co-crystal structure of an Inhibitor in complex with human PPARdelta LBD
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.28
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Peroxisome proliferator-activated receptor delta
Gene (Uniprot):PPARD
Chain IDs:A, B
Chain Length:275
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Selective PPAR delta Modulators Improve Mitochondrial Function: Potential Treatment for Duchenne Muscular Dystrophy (DMD).
ACS Med Chem Lett 9 935 940 (2018)
PMID: 30258544 DOI: 10.1021/acsmedchemlett.8b00287

Abstact

The X-ray structure of the previously reported PPARδ modulator 1 bound to the ligand binding domain (LBD) revealed that the amide moiety in 1 exists in the thermodynamically disfavored cis-amide orientation. Isosteric replacement of the cis-amide with five-membered heterocycles led to the identification of imidazole 17 (MA-0204), a potent, selective PPARδ modulator with good pharmacokinetic properties. MA-0204 was tested in vivo in mice and in vitro in patient-derived muscle myoblasts (from Duchenne Muscular Dystrophy (DMD) patients); 17 altered the expression of PPARδ target genes and improved fatty acid oxidation, which supports the therapeutic hypothesis for the study of MA-0204 in DMD patients.

Legend

Protein

Chemical

Disease

Primary Citation of related structures