5ZWP image
Deposition Date 2018-05-16
Release Date 2018-06-13
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5ZWP
Keywords:
Title:
Crystal structure of the delta-class glutathione transferase from Musca domestica
Biological Source:
Source Organism:
Musca domestica (Taxon ID: 7370)
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glutathione S-transferase 1
Gene (Uniprot):Gst1
Mutations:F173I
Chain IDs:A, B
Chain Length:208
Number of Molecules:2
Biological Source:Musca domestica
Primary Citation
Crystal structure of the delta-class glutathione transferase in Musca domestica
Biochem. Biophys. Res. Commun. 502 345 350 (2018)
PMID: 29803675 DOI: 10.1016/j.bbrc.2018.05.161

Abstact

Among the various glutathione transferase (GST) isozymes in insects, the delta- and epsilon-class GSTs fulfill critical functions during the detoxification of insecticides. We crystalized MdGSTD1, the major delta-class GST isozyme in the housefly (Musca domestica), in complex with glutathione (GSH) and solved its structure at a resolution of 1.4 Å. The overall folding of MdGSTD1 resembled other known delta-class GSTs. Its substrate binding pocket was exposed to solvent and considerably more open than in the epsilon-class GST from M. domestica (MdGSTE2). However, their C-terminal structures differed the most because of the different lengths of the C-terminal regions. Although this region does not seem to directly interact with substrates, its deletion reduced the enzymatic activity by more than 70%, indicating a function in maintaining the proper conformation of the binding pocket. Binding of GSH to the GSH-binding region of MdGSTD1 results in a rigid conformation of this region. Although MdGSTD1 has a higher affinity for GSH than the epsilon class enzymes, the thiol group of the GSH molecule was not close enough to serine residue 9 to form a hydrogen-bond with this residue, which is predicted to act as the catalytic center for thiol group deprotonation in GSH.

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