5ZTC image
Deposition Date 2018-05-02
Release Date 2019-06-12
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5ZTC
Keywords:
Title:
Apo structure of TetR family transcription regulator Lmo2088 of Listeria monocytogenes EGDe
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lmo2088 protein
Gene (Uniprot):lmo2088
Chain IDs:A, B
Chain Length:204
Number of Molecules:2
Biological Source:Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Ligand Molecules
Primary Citation
X-ray crystal structure of putative transcription regulator lmo2088 from Listeria monocytogenes.
Biochem.Biophys.Res.Commun. 520 434 440 (2019)
PMID: 31607473 DOI: 10.1016/j.bbrc.2019.10.033

Abstact

Listeria monocytogenes is a gram-positive food borne pathogen. The lmo2088 belongs to the TetR family of transcriptional regulators from L. monocytogenes. These transcriptional factors regulate multidrug resistance transporters in L. monocytogenes. Here, we report native protein crystal structure of lmo2088 at a resolution of 1.7 Å. Lmo2088 comprises of an N-terminal DNA binding domain and a variable C-terminal effector binding domain. Furthermore, we identified specific consensus sequences selected by systematic evolution of ligands by exponential enrichment in vitro. The specific binding of lmo2088 with DNA consensus sequence was validated by electrophoretic mobility shift assay, fluorescence polarization and isothermal titration calorimetry. We speculate that the structure of lmo2088 might provide an insight into the regulatory function of lmo2088 of L. monocytogenes.

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Chemical

Disease

Primary Citation of related structures
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