5ZTB image
Deposition Date 2018-05-02
Release Date 2019-06-12
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5ZTB
Title:
Structure of Sulfurtransferase
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:tRNA-5-methyluridine(54) 2-sulfurtransferase
Gene (Uniprot):ttuA
Chain IDs:B, D (auth: A), F (auth: C)
Chain Length:321
Number of Molecules:3
Biological Source:Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sulfur carrier protein TtuB
Gene (Uniprot):ttuB
Chain IDs:A (auth: E), C (auth: D), E (auth: F)
Chain Length:74
Number of Molecules:3
Biological Source:Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Primary Citation
The [4Fe-4S] cluster of sulfurtransferase TtuA desulfurizes TtuB during tRNA modification in Thermus thermophilus.
Commun Biol 3 168 168 (2020)
PMID: 32265486 DOI: 10.1038/s42003-020-0895-3

Abstact

TtuA and TtuB are the sulfurtransferase and sulfur donor proteins, respectively, for biosynthesis of 2-thioribothymidine (s2T) at position 54 of transfer RNA (tRNA), which is responsible for adaptation to high temperature environments in Thermus thermophilus. The enzymatic activity of TtuA requires an iron-sulfur (Fe-S) cluster, by which a sulfur atom supplied by TtuB is transferred to the tRNA substrate. Here, we demonstrate that the Fe-S cluster directly receives sulfur from TtuB through its inherent coordination ability. TtuB forms a [4Fe-4S]-TtuB intermediate, but that sulfur is not immediately released from TtuB. Further desulfurization assays and mutation studies demonstrated that the release of sulfur from the thiocarboxylated C-terminus of TtuB is dependent on adenylation of the substrate tRNA, and the essential residue for TtuB desulfurization was identified. Based on these findings, the molecular mechanism of sulfur transfer from TtuB to Fe-S cluster is proposed.

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Primary Citation of related structures