5ZT3 image
Deposition Date 2018-05-01
Release Date 2018-05-30
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5ZT3
Keywords:
Title:
Crystal structure of WA352 from Oryza sativa
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.19
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:WA352
Chain IDs:A
Chain Length:130
Number of Molecules:1
Biological Source:Oryza sativa subsp. indica
Primary Citation
Crystal structure of WA352 provides insight into cytoplasmic male sterility in rice
Biochem. Biophys. Res. Commun. 501 898 904 (2018)
PMID: 29775612 DOI: 10.1016/j.bbrc.2018.05.079

Abstact

Plant cytoplasmic male sterility (CMS) is an important phenomenon and is widely utilized in hybrid crop breeding. The Wild Abortive CMS (CMS-WA), a well-known CMS type, has been successfully applied in the commercial production of hybrid rice seeds for more than 40 years. The CMS-WA causal gene WA352 encodes a novel transmenbrane protein and the interacts with the mitochondrial copper chaperone COX11, triggering reactive oxygen species production and resulting in male sterility in CMS-WA lines. However, the structure of WA352 is currently unknown, and the structural mechanism whereby WA352 perturbs COX11 function to cause CMS remains largely unknown. Here, we report the crystal structure of the C-terminal functional domain of WA352 at 1.3 Å resolution. This functional domain, consisting of five α helices, is spindle-shaped with a length of 42 Å, and a diameter of 28 Å. Notably, the absence of any structural similarity to a known protein structure suggests that the WA352 functional domain is a novel fold. In addition, surface conservation analysis and structural modeling of the WA352-COX11 complex revealed details about the WA352-COX11 interaction. Further structural analysis suggested that the WA352-COX11 interaction blocks the copper ion transportation activity of COX11, which is essential for the assembly of cytochrome c oxidase, resulting in male sterility in CMS-WA lines. Our study paves the way toward structural determination of the WA352-COX11 complex and provides new insight into the mechanism of plant CMS.

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