5ZMW image
Deposition Date 2018-04-06
Release Date 2019-04-03
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5ZMW
Keywords:
Title:
Crystal structure of the E309Q mutant of SR Ca2+-ATPase in E2(TG)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Sarcoplasmic/endoplasmic reticulum calcium ATPase 1
Gene (Uniprot):ATP2A1
Mutations:E309Q
Chain IDs:A
Chain Length:1000
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Primary Citation
Mechanism of the E2 to E1 transition in Ca2+pump revealed by crystal structures of gating residue mutants.
Proc. Natl. Acad. Sci. U.S.A. 115 12722 12727 (2018)
PMID: 30482857 DOI: 10.1073/pnas.1815472115

Abstact

Ca2+-ATPase of sarcoplasmic reticulum (SERCA1a) pumps two Ca2+ per ATP hydrolyzed from the cytoplasm and two or three protons in the opposite direction. In the E2 state, after transferring Ca2+ into the lumen of sarcoplasmic reticulum, all of the acidic residues that coordinate Ca2+ are thought to be protonated, including the gating residue Glu309. Therefore a Glu309Gln substitution is not expected to significantly perturb the structure. Here we report crystal structures of the Glu309Gln and Glu309Ala mutants of SERCA1a under E2 conditions. The Glu309Gln mutant exhibits, unexpectedly, large structural rearrangements in both the cytoplasmic and transmembrane domains, apparently uncoupling them. However, the structure definitely represents E2 and, together with the help of quantum chemical calculations, allows us to postulate a mechanism for the E2 → E1 transition triggered by deprotonation of Glu309.

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