5ZKG image
Entry Detail
PDB ID:
5ZKG
Keywords:
Title:
Crystal Structure of C-terminal Domain of Plasmodium vivax p43
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-03-23
Release Date:
2019-04-24
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 43
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Aminoacyl-tRna synthetase-interacting multifunctional protein P43
Chain IDs:A, B
Chain Length:204
Number of Molecules:2
Biological Source:Plasmodium vivax
Ligand Molecules
Primary Citation
Crystal structures of the two domains that constitute the Plasmodium vivax p43 protein.
Acta Crystallogr D Struct Biol 76 135 146 (2020)
PMID: 32038044 DOI: 10.1107/S2059798319016413

Abstact

Scaffold modules known as aminoacyl-tRNA synthetase (aaRS)-interacting multifunctional proteins (AIMPs), such as AIMP1/p43, AIMP2/p38 and AIMP3/p18, are important in driving the assembly of multi-aaRS (MARS) complexes in eukaryotes. Often, AIMPs contain an N-terminal glutathione S-transferase (GST)-like domain and a C-terminal OB-fold tRNA-binding domain. Recently, the apicomplexan-specific Plasmodium falciparum p43 protein (Pfp43) has been annotated as an AIMP and its tRNA binding, tRNA import and membrane association have been characterized. The crystal structures of both the N- and C-terminal domains of the Plasmodium vivax p43 protein (Pvp43), which is an ortholog of Pfp43, have been resolved. Analyses reveal the overall oligomeric structure of Pvp43 and highlight several notable features that show Pvp43 to be a soluble, cytosolic protein. The dimeric assembly of the N-terminal GST-like domain of Pvp43 differs significantly from canonical GST dimers, and it is tied to the C-terminal tRNA-binding domain via a linker region. This work therefore establishes a framework for dissecting the additional roles of p43 orthologs in eukaryotic multi-protein MARS complexes.

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Primary Citation of related structures