5ZKA image
Deposition Date 2018-03-23
Release Date 2018-12-05
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5ZKA
Keywords:
Title:
Crystal structure of N-acetylneuraminate lyase from Fusobacterium nucleatum complexed with Pyruvate
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.76 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:N-acetylneuraminate lyase
Gene (Uniprot):nanA
Chain IDs:A
Chain Length:307
Number of Molecules:1
Biological Source:Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:N-acetylneuraminate lyase
Gene (Uniprot):nanA
Chain IDs:B
Chain Length:296
Number of Molecules:1
Biological Source:Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
KPI A LYS modified residue
Primary Citation
Crystal structures and kinetics of N-acetylneuraminate lyase from Fusobacterium nucleatum
Acta Crystallogr F Struct Biol Commun 74 725 732 (2018)
PMID: 30387778 DOI: 10.1107/S2053230X18012992

Abstact

N-Acetyl-D-neuraminic acid lyase (NanA) catalyzes the breakdown of sialic acid (Neu5Ac) to N-acetyl-D-mannosamine (ManNAc) and pyruvate. NanA plays a key role in Neu5Ac catabolism in many pathogenic and bacterial commensals where sialic acid is available as a carbon and nitrogen source. Several pathogens or commensals decorate their surfaces with sialic acids as a strategy to escape host innate immunity. Catabolism of sialic acid is key to a range of host-pathogen interactions. In this study, atomic resolution structures of NanA from Fusobacterium nucleatum (FnNanA) in ligand-free and ligand-bound forms are reported at 2.32 and 1.76 Å resolution, respectively. F. nucleatum is a Gram-negative pathogen that causes gingival and periodontal diseases in human hosts. Like other bacterial N-acetylneuraminate lyases, FnNanA also shares the triosephosphate isomerase (TIM)-barrel fold. As observed in other homologous enzymes, FnNanA forms a tetramer. In order to characterize the structure-function relationship, the steady-state kinetic parameters of the enzyme are also reported.

Legend

Protein

Chemical

Disease

Primary Citation of related structures