5ZJM image
Entry Detail
PDB ID:
5ZJM
Keywords:
Title:
Crystal structure of N-acetylneuraminate lyase from Fusobacterium nucleatum
Biological Source:
PDB Version:
Deposition Date:
2018-03-21
Release Date:
2019-01-23
Method Details:
Experimental Method:
Resolution:
2.32 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:N-acetylneuraminate lyase
Chain IDs:A, B, C, D
Chain Length:291
Number of Molecules:4
Biological Source:Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Ligand Molecules
Primary Citation
Crystal structures and kinetics of N-acetylneuraminate lyase from Fusobacterium nucleatum
Acta Crystallogr F Struct Biol Commun 74 725 732 (2018)
PMID: 30387778 DOI: 10.1107/S2053230X18012992

Abstact

N-Acetyl-D-neuraminic acid lyase (NanA) catalyzes the breakdown of sialic acid (Neu5Ac) to N-acetyl-D-mannosamine (ManNAc) and pyruvate. NanA plays a key role in Neu5Ac catabolism in many pathogenic and bacterial commensals where sialic acid is available as a carbon and nitrogen source. Several pathogens or commensals decorate their surfaces with sialic acids as a strategy to escape host innate immunity. Catabolism of sialic acid is key to a range of host-pathogen interactions. In this study, atomic resolution structures of NanA from Fusobacterium nucleatum (FnNanA) in ligand-free and ligand-bound forms are reported at 2.32 and 1.76 Å resolution, respectively. F. nucleatum is a Gram-negative pathogen that causes gingival and periodontal diseases in human hosts. Like other bacterial N-acetylneuraminate lyases, FnNanA also shares the triosephosphate isomerase (TIM)-barrel fold. As observed in other homologous enzymes, FnNanA forms a tetramer. In order to characterize the structure-function relationship, the steady-state kinetic parameters of the enzyme are also reported.

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