5ZHQ image
Deposition Date 2018-03-13
Release Date 2019-03-20
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5ZHQ
Keywords:
Title:
Crystal structure of Scylla paramamosain arginine kinase
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Arginine kinase
Chain IDs:A, B
Chain Length:357
Number of Molecules:2
Biological Source:Scylla paramamosain
Ligand Molecules
Primary Citation
Crystal structure determination of Scylla paramamosain arginine kinase, an allergen that may cause cross-reactivity among invertebrates.
Food Chem 271 597 605 (2019)
PMID: 30236721 DOI: 10.1016/j.foodchem.2018.08.003

Abstact

Shellfish are one of the most common causes of food allergy. Arginine kinase (AK) is known as an important allergen in shellfish. In the present study, AK from crab (Scylla paramamosain) was purified and its crystal structure was determined. A comparison of AK from S. paramamosain to AKs of other species showed high amino acid sequence and secondary structure identity, while the superposition of crystal structures of AKs from different species revealed only slight differences. Similarity of the linear epitope regions among species was observed in the epitope alignment of AKs; conformational epitopes were located in the regions where secondary structure was conserved. The structure of S. paramamosain AK is an accurate template for the analysis of the IgE binding pattern, and the structure conservation and epitope similarity of AKs among species could help to inform our understanding of the cross-reactivity and contribute to the prediction of cross-reactivity related epitopes.

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