5ZFP image
Deposition Date 2018-03-06
Release Date 2018-05-09
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5ZFP
Title:
Structure of the ExbB/ExbD hexameric complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.84 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Biopolymer transport protein ExbB
Gene (Uniprot):exbB
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:244
Number of Molecules:12
Biological Source:Escherichia coli (strain K12)
Primary Citation
Hexameric and pentameric complexes of the ExbBD energizer in the Ton system.
Elife 7 ? ? (2018)
PMID: 29661272 DOI: 10.7554/eLife.35419

Abstact

Gram-negative bacteria import essential nutrients such as iron and vitamin B12 through outer membrane receptors. This process utilizes proton motive force harvested by the Ton system made up of three inner membrane proteins, ExbB, ExbD and TonB. ExbB and ExbD form the proton channel that energizes uptake through TonB. Recently, crystal structures suggest that the ExbB pentamer is the scaffold. Here, we present structures of hexameric complexes of ExbB and ExbD revealed by X-ray crystallography and single particle cryo-EM. Image analysis shows that hexameric and pentameric complexes coexist, with the proportion of hexamer increasing with pH. Channel current measurement and 2D crystallography support the existence and transition of the two oligomeric states in membranes. The hexameric complex consists of six ExbB subunits and three ExbD transmembrane helices enclosed within the central channel. We propose models for activation/inactivation associated with hexamer and pentamer formation and utilization of proton motive force.

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