5ZF0 image
Deposition Date 2018-03-01
Release Date 2018-04-11
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5ZF0
Title:
X-ray Structure of the Electron Transfer Complex between Ferredoxin and Photosystem I
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.20 Å
R-Value Free:
0.37
R-Value Work:
0.35
R-Value Observed:
0.35
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:A (auth: A1), M (auth: A2), Y (auth: A3), KA (auth: A4), WA (auth: A6), IB (auth: A5)
Chain Length:755
Number of Molecules:6
Biological Source:Thermosynechococcus elongatus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:B (auth: B1), N (auth: B2), Z (auth: B3), LA (auth: B4), XA (auth: B6), JB (auth: B5)
Chain Length:740
Number of Molecules:6
Biological Source:Thermosynechococcus elongatus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:C (auth: C1), O (auth: C2), AA (auth: C3), MA (auth: C4), YA (auth: C6), KB (auth: C5)
Chain Length:80
Number of Molecules:6
Biological Source:Thermosynechococcus elongatus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II
Gene (Uniprot):psaD
Chain IDs:D (auth: D1), P (auth: D2), BA (auth: D3), NA (auth: D4), ZA (auth: D6), LB (auth: D5)
Chain Length:138
Number of Molecules:6
Biological Source:Thermosynechococcus elongatus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IV
Gene (Uniprot):psaE
Chain IDs:E (auth: E1), Q (auth: E2), CA (auth: E3), OA (auth: E4), AB (auth: E6), MB (auth: E5)
Chain Length:75
Number of Molecules:6
Biological Source:Thermosynechococcus elongatus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit III
Gene (Uniprot):psaF
Chain IDs:F (auth: F1), R (auth: F2), DA (auth: F3), PA (auth: F4), BB (auth: F6), NB (auth: F5)
Chain Length:164
Number of Molecules:6
Biological Source:Thermosynechococcus elongatus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI
Chain IDs:G (auth: I1), S (auth: I2), EA (auth: I3), QA (auth: I4), CB (auth: I6), OB (auth: I5)
Chain Length:38
Number of Molecules:6
Biological Source:Thermosynechococcus elongatus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Gene (Uniprot):psaJ
Chain IDs:H (auth: J1), T (auth: J2), FA (auth: J3), RA (auth: J4), DB (auth: J6), PB (auth: J5)
Chain Length:41
Number of Molecules:6
Biological Source:Thermosynechococcus elongatus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit PsaK
Gene (Uniprot):psaK
Chain IDs:I (auth: K1), U (auth: K2), GA (auth: K3), SA (auth: K4), EB (auth: K6), QB (auth: K5)
Chain Length:83
Number of Molecules:6
Biological Source:Thermosynechococcus elongatus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XI
Gene (Uniprot):psaL
Chain IDs:J (auth: L1), V (auth: L2), HA (auth: L3), TA (auth: L4), FB (auth: L6), RB (auth: L5)
Chain Length:154
Number of Molecules:6
Biological Source:Thermosynechococcus elongatus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XII
Gene (Uniprot):psaM
Chain IDs:K (auth: M1), W (auth: M2), IA (auth: M3), UA (auth: M4), GB (auth: M6), SB (auth: M5)
Chain Length:31
Number of Molecules:6
Biological Source:Thermosynechococcus elongatus BP-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ferredoxin-1
Gene (Uniprot):petF1
Chain IDs:UB (auth: P1), VB (auth: P2), WB (auth: P3), XB (auth: P4), YB (auth: P6), ZB (auth: P5)
Chain Length:97
Number of Molecules:6
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:PsaX
Chain IDs:L (auth: X1), X (auth: X2), JA (auth: X3), VA (auth: X4), HB (auth: X6), TB (auth: X5)
Chain Length:35
Number of Molecules:6
Biological Source:Thermosynechococcus elongatus
Primary Citation
X-ray structure of an asymmetrical trimeric ferredoxin-photosystem I complex
Nat Plants 4 218 224 (2018)
PMID: 29610537 DOI: 10.1038/s41477-018-0130-0

Abstact

Photosystem I (PSI), a large protein complex located in the thylakoid membrane, mediates the final step in light-driven electron transfer to the stromal electron carrier protein ferredoxin (Fd). Here, we report the first structural description of the PSI-Fd complex from Thermosynechococcus elongatus. The trimeric PSI complex binds three Fds in a non-equivalent manner. While each is recognized by a PSI protomer in a similar orientation, the distances between Fds and the PSI redox centres differ. Fd binding thus entails loss of the exact three-fold symmetry of the PSI's soluble subunits, inducing structural perturbations which are transferred to the lumen through PsaF. Affinity chromatography and nuclear magnetic resonance analyses of PSI-Fd complexes support the existence of two different Fd-binding states, with one Fd being more tightly bound than the others. We propose a dynamic structural basis for productive complex formation, which supports fast electron transfer between PSI and Fd.

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