5ZDO image
Deposition Date 2018-02-23
Release Date 2018-12-05
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5ZDO
Keywords:
Title:
Crystal Structure Analysis of TtQRS in co-crystallised with ATP
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glutamine-tRNA ligase
Gene (Uniprot):TTHA0549
Chain IDs:A
Chain Length:548
Number of Molecules:1
Biological Source:Thermus thermophilus HB8
Ligand Molecules
Primary Citation
Structural and functional analysis of Glutaminyl-tRNA synthetase (TtGlnRS) from Thermus thermophilus HB8 and its complexes
Int. J. Biol. Macromol. 120 1379 1386 (2018)
PMID: 30248426 DOI: 10.1016/j.ijbiomac.2018.09.115

Abstact

Aminoacyl-tRNA synthetases (AaRSs) are vital enzymes for translation of proteins in cells. AaRSs catalyse the esterification of a specific amino acid to corresponding tRNAs to form an aminoacyl-tRNA that is used in ribosome-based protein synthesis. We focused on Glutaminyl tRNA synthetase (GlnRS) enzyme from the extreme thermophile Thermus thermophilus for structural studies. Our thermal shift assays show binding of enzyme substrates L-Gln and ATP as well as of various metals including cesium. We resolved crystal structures of apo-GlnRS as well as those in complex with AMP and ATP at 2.8 Å, 2.4 Å and 2.6 Å respectively. The bound cesium was found at the site of magnesium that typically binds to GlnRS. High structural conservation was evident in the Thermus thermophilus GlnRS when compared to those from Escherichia coli GlnRS.

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Primary Citation of related structures