5ZCT image
Deposition Date 2018-02-20
Release Date 2018-07-25
Last Version Date 2025-09-17
Entry Detail
PDB ID:
5ZCT
Keywords:
Title:
The crystal structure of the poly-alpha-L-glutamate peptides synthetase RimK at 2.05 angstrom resolution.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S6--L-glutamate ligase
Gene (Uniprot):rimK
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:306
Number of Molecules:8
Biological Source:Escherichia coli (strain K12)
Primary Citation
Structural polymorphism of the Escherichia coli poly-alpha-L-glutamate synthetase RimK
Acta Crystallogr F Struct Biol Commun 74 385 390 (2018)
PMID: 29969101 DOI: 10.1107/S2053230X18007689

Abstact

Bacterial RimK is an enzyme that catalyzes the polyglutamylation of the C-terminus of ribosomal protein S6 and the synthesis of poly-α-L-glutamate peptides using L-glutamic acid. In the present study, the crystal structure of the Escherichia coli RimK protein complexed with the ATP analogue AMP-PNP was determined at 2.05 Å resolution. Two different conformations of RimK, closed and open forms, were observed in the crystals. The structural polymorphism revealed in this study provided important information to understand the mechanism by which RimK catalyzes the synthesis of poly-α-L-glutamate peptides and the polyglutamylation of ribosomal protein S6.

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