5ZBU image
Deposition Date 2018-02-12
Release Date 2019-02-27
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5ZBU
Keywords:
ENDOCYTOSIS
Title:
Crystal Structure of PA-TM-RING E3 ligase RNF13 RING domain in complex with E2~Ub
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.20 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
5ZBU validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase RNF13
Gene (Uniprot):RNF13
Chain IDs:C (auth: A), D
Chain Length:76
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:O43567 Pfam ID:PF13639
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 D2
Gene (Uniprot):UBE2D2
Mutagens:C85K
Chain IDs:A (auth: C), B
Chain Length:148
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P62837 Pfam ID:PF00179 EC:2.3.2.23
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin
Gene (Uniprot):UBB
Chain IDs:E
Chain Length:76
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P0CG47 Pfam ID:PF00240
Ligand Molecules
ZN
Primary Citation
Crystal Structure of PA-TM-RING E3 ligase RNF13 RING domain in complex with E2~Ub
To Be Published ? ? ? (?)
Primary Citation of related structures
5ZBU