5ZBT image
Deposition Date 2018-02-12
Release Date 2019-02-20
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5ZBT
Title:
Structure of legume lectin-like domain from Entamoeba histolytica
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lectin-like protein
Gene (Uniprot):EHI7A_000050
Chain IDs:A
Chain Length:251
Number of Molecules:1
Biological Source:Entamoeba histolytica HM-1:IMSS-A
Primary Citation
Crystal structure of the legume lectin-like domain of an ERGIC-53-like protein from Entamoeba histolytica
Acta Crystallogr F Struct Biol Commun 75 197 204 (2019)
PMID: 30839295 DOI: 10.1107/S2053230X19000499

Abstact

ERGIC-53-like proteins are type I membrane proteins that belong to the class of intracellular cargo receptors and are known to be indispensable for the intracellular transport of glycoproteins. They are implicated in transporting glycoproteins between the endoplasmic reticulum and the Golgi body. The crystal structure of the legume lectin-like domain of an ERGIC-53-like protein from Entamoeba histolytica has been determined at 2.4 Å resolution. Although the overall structure of the domain resembles those of its mammalian and yeast orthologs (ERGIC-53 and Emp46, respectively), there are significant changes in the carbohydrate-binding site. A sequence-based search revealed the presence of several homologs of ERGIC-53 in different species of Entamoeba. This is the first report of the structural characterization of a member of this class of proteins from a protozoan and serves to further knowledge and understanding regarding the species-specific differences.

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