5ZBR image
Deposition Date 2018-02-12
Release Date 2018-05-30
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5ZBR
Title:
Crystal Structure of Kinesin-3 KIF13B motor domain in AMPPNP form
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 32
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Kinesin family member 13B
Gene (Uniprot):Kif13b
Chain IDs:A (auth: B), B (auth: A), C
Chain Length:375
Number of Molecules:3
Biological Source:Rattus norvegicus
Primary Citation
Structural Delineation of the Neck Linker of Kinesin-3 for Processive Movement.
J. Mol. Biol. 430 2030 2041 (2018)
PMID: 29752968 DOI: 10.1016/j.jmb.2018.05.010

Abstact

Processive kinesin motors contain a neck linker (NL) that mediates the chemo-mechanical coupling and controls the directionality and processivity. However, kinesin-3 NL remains poorly determined due to the lack of the structural information of the junction with the following neck coil (NC). Here, we determined the structure of the motor domain (MD)-NL-NCNT tandem of KIF13B that defines the junction between NL and NC and delineates kinesin-3 NL. Unexpectedly, the length of kinesin-3 NL is much shorter than the previously predicted one. In the MD-NL-NCNT structure, NL docks onto the MD with a conventional mode but the interaction between NL and the MD is relatively weak due to the shorter N-terminal cover strand of the MD. The optimal short NL and its weak interaction with the MD would generate the tight inter-head strain and facilitate the NL undocking, which may contribute to the fast and superprocessive motility of kinesin-3.

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