5ZBN image
Deposition Date 2018-02-12
Release Date 2018-12-26
Last Version Date 2025-03-12
Entry Detail
PDB ID:
5ZBN
Keywords:
Title:
Structure of glycolate oxidase without FMN from Nicotiana benthamiana
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.32 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glycolate oxidase
Gene (Uniprot):GOX
Chain IDs:A, B, C
Chain Length:371
Number of Molecules:3
Biological Source:Nicotiana benthamiana
Ligand Molecules
Primary Citation
Structures of glycolate oxidase from Nicotiana benthamiana reveal a conserved pH sensor affecting the binding of FMN.
Biochem.Biophys.Res.Commun. 503 3050 3056 (2018)
PMID: 30143257 DOI: 10.1016/j.bbrc.2018.08.092

Abstact

Glycolate oxidase (GOX), a flavin mononucleotide (FMN)-dependent enzyme, modulates reactive oxygen species-mediated signal transduction in green plants. It has been a target protein for crop improvement because of performing a key step in photorespiration that causes the energy losses. In human, GOX is involved in the production of oxalate, which is a key metabolite in the formation of kidney stone. Here, we report the first apo-GOX structure and its complex structure with cofactor FMN from Nicotiana benthamiana by X-ray crystallography. The binding of FMN induces a pronounced conformational change of GOX tetramer. Interestingly, a conserved pH sensor found among different species might directly regulate the binding of FMN and the enzyme activity. Combined with enzymatic experiments and biophysical analyses, we provide new insights in the molecular mechanism of regulating GOX biological activity reversibly and new methods of agricultural production and clinical application.

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