5ZBD image
Deposition Date 2018-02-11
Release Date 2018-12-19
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5ZBD
Keywords:
Title:
Crystal structure of tryptophan oxidase (C395A mutant) from Chromobacterium violaceum
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.20
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Flavin-dependent L-tryptophan oxidase VioA
Gene (Uniprot):vioA
Mutagens:C395A
Chain IDs:A, B
Chain Length:451
Number of Molecules:2
Biological Source:Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
Primary Citation
Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis.
J. Biochem. 164 359 367 (2018)
PMID: 30053101 DOI: 10.1093/jb/mvy065

Abstact

l-Tryptophan oxidase, VioA from Chromobacterium violaceum, which has a high substrate specificity for tryptophan, is useful for quantitative assay of tryptophan. However, stability of wild type VioA is not enough for its application in clinical or industrial use. To improve the thermal stability of the enzyme, we developed a VioA (C395A) mutant, with higher stability than wild type VioA. The VioA (C395A) exhibited similar specificity and kinetic parameter for tryptophan to wild type. Conventionally, the quantity of tryptophan is determined by instrumental methods, such as high-performance liquid chromatography (HPLC) after pre-column-derivatization. Using the mutant enzyme, we succeeded in the tryptophan quantification in human plasma samples, to an accuracy of <2.9% when compared to the instrumental method, and to a precision of CV <3.2%. To analyse the improvement in storage stability and substrate specificity, we further determined the crystal structures of VioA (C395A) complexed with FAD, and with FAD and tryptophan at 1.8 Å resolution.

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Primary Citation of related structures