5ZAP image
Deposition Date 2018-02-08
Release Date 2018-04-18
Last Version Date 2024-10-09
Entry Detail
PDB ID:
5ZAP
Keywords:
Title:
Atomic structure of the herpes simplex virus type 2 B-capsid
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):UL19
Chain IDs:A (auth: G), B (auth: A), C (auth: B), D (auth: C), E (auth: D), F (auth: E), G (auth: F), H, I, J, K, L, M, N, O, P
Chain Length:318
Number of Molecules:16
Biological Source:Human herpesvirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Triplex capsid protein 2
Gene (Uniprot):UL18
Chain IDs:Q, R, T, U, W, X, Z, AA (auth: a), CA (auth: c), DA (auth: d)
Chain Length:318
Number of Molecules:10
Biological Source:Human herpesvirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Triplex capsid protein 1
Gene (Uniprot):UL38
Chain IDs:S, V, Y, BA (auth: b), EA (auth: e)
Chain Length:466
Number of Molecules:5
Biological Source:Human herpesvirus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small capsomere-interacting protein
Gene (Uniprot):UL35
Chain IDs:FA (auth: f), GA (auth: g), HA (auth: h), IA (auth: i), JA (auth: j), KA (auth: k), LA (auth: l), MA (auth: m), NA (auth: n), OA (auth: o), PA (auth: p), QA (auth: q), RA (auth: r), SA (auth: s), TA (auth: t)
Chain Length:112
Number of Molecules:15
Biological Source:Human herpesvirus 2
Ligand Molecules
Primary Citation
Cryo-EM structure of a herpesvirus capsid at 3.1 angstrom.
Science 360 ? ? (2018)
PMID: 29622627 DOI: 10.1126/science.aao7283

Abstact

Structurally and genetically, human herpesviruses are among the largest and most complex of viruses. Using cryo-electron microscopy (cryo-EM) with an optimized image reconstruction strategy, we report the herpes simplex virus type 2 (HSV-2) capsid structure at 3.1 angstroms, which is built up of about 3000 proteins organized into three types of hexons (central, peripentonal, and edge), pentons, and triplexes. Both hexons and pentons contain the major capsid protein, VP5; hexons also contain a small capsid protein, VP26; and triplexes comprise VP23 and VP19C. Acting as core organizers, VP5 proteins form extensive intermolecular networks, involving multiple disulfide bonds (about 1500 in total) and noncovalent interactions, with VP26 proteins and triplexes that underpin capsid stability and assembly. Conformational adaptations of these proteins induced by their microenvironments lead to 46 different conformers that assemble into a massive quasisymmetric shell, exemplifying the structural and functional complexity of HSV.

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Primary Citation of related structures
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